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Neural entity typing models typically represent fine-grained entity types as vectors in a high-dimensional space, but such spaces are not well-suited to modeling these types' complex interdependencies. We study the ability of box embeddings, which embed concepts as d-dimensional hyperrectangles, to capture hierarchies of types even when these relationships are not defined explicitly in the ontology. Our model represents both types and entity mentions as boxes. Each mention and its context are fed into a BERT-based model to embed that mention in our box space; essentially, this model leverages typological clues present in the surface text to hypothesize a type representation for the mention. Box containment can then be used to derive both the posterior probability of a mention exhibiting a given type and the conditional probability relations between types themselves. We compare our approach with a vector-based typing model and observe state-of-the-art performance on several entity typing benchmarks. In addition to competitive typing performance, our box-based model shows better performance in prediction consistency (predicting a supertype and a subtype together) and confidence (i.e., calibration), demonstrating that the box-based model captures the latent type hierarchies better than the vector-based model does. 

Pre-trained language models induce dense entity representations that offer strong performance on entity-centric NLP tasks, but such representations are not immediately interpretable. This can be a barrier to model uptake in important domains such as biomedicine.There has been recent work on general interpretable representation learning (Onoe and Durrett, 2020), but these domain-agnostic representations do not readily transfer to the important domain of biomedicine. In this paper, we create a new entity type system and train-ing set from a large corpus of biomedical texts by mapping entities to concepts in a medical ontology, and from these to Wikipedia pages whose categories are our types. From this map-ping we deriveBiomedical Interpretable Entity Representations(BIERs), in which dimensions correspond to fine-grained entity types, and values are predicted probabilities that a given entity is of the corresponding type. We propose a novel method that exploits BIER’s final sparse and intermediate dense representations to facilitate model and entity type debugging. We show that BIERs achieve strong performance in biomedical tasks including named entity disambiguation and entity linking, and we provide error analysis to highlight the utility of their interpretability, particularly in low-supervision settings. Finally, we provide our induced 68K biomedical type system, the corresponding 37 million triples of derived data used to train BIER models and our best per-forming model. 

In standard methodology for natural language processing, entities in text are typically embedded in dense vector spaces with pre-trained models. The embeddings produced this way are effective when fed into downstream models, but they require end-task fine-tuning and are fundamentally difficult to interpret. In this paper, we present an approach to creating entity representations that are human readable and achieve high performance on entity-related tasks out of the box. Our representations are vectors whose values correspond to posterior probabilities over fine-grained entity types, indicating the confidence of a typing model’s decision that the entity belongs to the corresponding type. We obtain these representations using a fine-grained entity typing model, trained either on supervised ultra-fine entity typing data (Choi et al., 2018) or distantly-supervised examples from Wikipedia. On entity probing tasks involving recognizing entity identity, our embeddings used in parameter-free downstream models achieve competitive performance with ELMo- and BERT-based embeddings in trained models. We also show that it is possible to reduce the size of our type set in a learning-based way for particular domains. Finally, we show that these embeddings can be post-hoc modified through a small number of rules to incorporate domain knowledge and improve performance. 

Neural entity linking models are very powerful, but run the risk of overfitting to the domain they are trained in. For this problem, a "domain" is characterized not just by genre of text but even by factors as specific as the particular distribution of entities, as neural models tend to overfit by memorizing properties of frequent entities in a dataset. We tackle the problem of building robust entity linking models that generalize effectively and do not rely on labeled entity linking data with a specific entity distribution. Rather than predicting entities directly, our approach models fine-grained entity properties, which can help disambiguate between even closely related entities. We derive a large inventory of types (tens of thousands) from Wikipedia categories, and use hyperlinked mentions in Wikipedia to distantly label data and train an entity typing model. At test time, we classify a mention with this typing model and use soft type predictions to link the mention to the most similar candidate entity. We evaluate our entity linking system on the CoNLL-YAGO dataset and show that our approach outperforms prior domain-independent entity linking systems. We also test our approach in a harder setting derived from the WikilinksNED dataset where all the mention-entity pairs are unseen during test time. Results indicate that our approach generalizes better than a state-of-the-art neural model on the dataset. 

Neural entity linking models are very powerful, but run the risk of overfitting to the domain they are trained in. For this problem, a “domain” is characterized not just by genre of text but even by factors as specific as the particular distribution of entities, as neural models tend to overfit by memorizing properties of frequent entities in a dataset. We tackle the problem of building robust entity linking models that generalize effectively and do not rely on labeled entity linking data with a specific entity distribution. Rather than predicting entities directly, our approach models fine-grained entity properties, which can help disambiguate between even closely related entities. We derive a large inventory of types (tens of thousands) from Wikipedia categories, and use hyperlinked mentions in Wikipedia to distantly label data and train an entity typing model. At test time, we classify a mention with this typing model and use soft type predictions to link the mention to the most similar candidate entity. We evaluate our entity linking system on the CoNLL-YAGO dataset (Hoffart et al. 2011) and show that our approach outperforms prior domain-independent entity linking systems. We also test our approach in a harder setting derived from the WikilinksNED dataset (Eshel et al. 2017) where all the mention-entity pairs are unseen during test time. Results indicate that our approach generalizes better than a state-of-the-art neural model on the dataset.